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Further information on the system, as well as all the details of the simulation, can be found in C. We use the system's total potential energy, denoted by U, to distinguish between the two stable states. For a sufficiently narrow attractive well, the system undergoes a first-order like freezing transition from an expanded disordered coil to a compact crystalline state. Non-neighboring monomers interact via a short-ranged attractive interaction with a repulsive core. The system under investigation is a single, flexible chain of identical monomers, linked together by harmonic springs. Each line contains the result of a committor calculation for a configuration, as well as a list of collective variables describing that particular configuration. The data are real simulation results and stored in database_polymer.csv.

#RAPIDMINER STUDIO 6.5 DOWNLOAD HOW TO#

Here, we will show how to construct a string reaction coordinate for the folding of a polymer chain. Example: construct a string reaction coordinate for polymer folding

Once installed, you should have an additional menu entry 'String Coordinate Extension' and the corresponding operator in your operator selection menu. USER_HOME/.RapidMiner/extensions for RapidMiner 6 Lib/plugins (relative to the RapidMiner root directory) for RapidMiner 5.3 Secondly, copy the extension file StringCoordinate.jar into the proper directory:

#RAPIDMINER STUDIO 6.5 DOWNLOAD INSTALL#

Refer to the RapidMiner manual for further information on how to install and run the program on your platform. In particular, when the bug occurs, one cannot use any text input fields in RapidMiner.

#RAPIDMINER STUDIO 6.5 DOWNLOAD MAC OS#

The extension should work with RapidMiner 5.3 and newer versions, however, there is a bug when using 5.3 with newer versions of Mac OS X, so in that case, you should definitely install RapidMiner version 6. RapidMiner is implementend in Java and should thus in principle run on any platform. While there is an extendend commercial version available for sale, you will only need the free open-source version in order to install the StringCooordinate extension. Note that you will have to create an account in order to download the software. Installation and compatibilityįirst, you have to install the base version of RapidMiner from. 133, 174110 (2010), and more information on the example application shown later is provided in C. More information on the method can be found in W.

It implements the non-linear string reaction coordinate method to be used from within RapidMiner. StringCoordinate is an extension (plugin) for RapidMiner, a machine learning and data mining framework. Be sure to use the latest version, as it will have fixes for bugs present in older versions. String coordinate implementation for RapidMinerĭownload the extension + source code + example application: rapidminer_string_coordinate.0.1.2.zip (2.0 MB, date: September 24, 2015)įeel free to contact me if you have any problems using this software: christian leitold.

Rapidminer studio 6.5 download